- Superintendent
- Deputy Superintendent
- Chief Secretary
◇ Tainan Branch
◇ Pingtung Branch
- Department of Internal Medicine
- Department of Surgery
- Department of Orthopedics
- Department of Obstetrics and Gynecology
- Department of Pediatrics
- Department of Physical Medicine & Rehabilitation
- Department of Radiology
- Department of Psychiatry
- Department of Emergency
- Department of Ophthalmology
- Department of Otolaryngology - Head & Neck Surgery
- Department of Radiotherapy and Oncology
- Department of Pathology & Laboratory Medicine
- Department of Family Medicine
- Department of Anesthesiology
- Department of Stomatology
- Department of Critical Care Medicine
- Department of Pharmacy
- Department of Nursing
- Department of Medical Education and Research
- Department of Medical Affair Administration
- Physical Examination Center
- Center for Geriatrics and Gerontology
- Cancer Center
- Quality Management Center
- Nuclear Medicine
- Division of Dermatology
- Center for Traditional Medicine
- Division of Occupational Medicine
- Infection Control Unit
- Nutrition Office
- Social Work Office
- Occupational Safety and Health Office
- Engineering & Maintenance Office
- Supply Office
- General Affairs Office
- Information Management Office
- Personnel Office
- Civil Service Ethics Office
- Accounting and Statistics Office